PUBLICATIONS

A timeline of our latest preprints and journal archives of our research and featured studies.


JOURNALS

Cross-modal coherent registration of whole mouse brains
Qu L; Li Y; Xie P; Liu L; Wang Y; Wu J; Liu Y; Wang T; Li L; Guo K; Wan W; Ouyang L; Xiong F; Kolstad AC; Wu Z; Xu F; Zheng Y; Gong H; Luo Q; Bi G; Dong H; Hawrylycz M; Zeng H; Peng H;
Nat Methods. 2021-Dec-1;
PMID: 34887551   DOI: https://doi.org/10.1038/s41592-021-01334-w

Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH
Zhang M; Eichhorn SW; Zingg B; Yao Z; Cotter K; Zeng H; Dong H; Zhuang X;
Nature. 2021-Oct-6; 598(7879):137-143
https://pubmed.ncbi.nlm.nih.gov/34616063/
PMID: 34616063   DOI: https://doi.org/10.1038/s41586-021-03705-x


Cellular anatomy of the mouse primary motor cortex
Muñoz-Castañeda R; Zingg B; Matho KS; Chen X; Wang Q; Foster NN; Li A; Narasimhan A; Hirokawa KE; Huo B; Bannerjee S; Korobkova L; Park CS; Park YG; Bienkowski MS; Chon U; Wheeler DW; Li X; Wang Y; Naeemi M; Xie P; Liu L; Kelly K; An X; Attili SM; Bowman I; Bludova A; Cetin A; Ding L; Drewes R; D'Orazi F; Elowsky C; Fischer S; Galbavy W; Gao L; Gillis J; Groblewski PA; Gou L; Hahn JD; Hatfield JT; Hintiryan H; Huang JJ; Kondo H; Kuang X; Lesnar P; Li X; Li Y; Lin M; Lo D; Mizrachi J; Mok S; Nicovich PR; Palaniswamy R; Palmer J; Qi X; Shen E; Sun YC; Tao HW; Wakemen W; Wang Y; Yao S; Yuan J; Zhan H; Zhu M; Ng L; Zhang LI; Lim BK; Hawrylycz M; Gong H; Gee JC; Kim Y; Chung K; Yang XW; Peng H; Luo Q; Mitra PP; Zador AM; Zeng H; Ascoli GA; Josh Huang Z; Osten P; Harris JA; Dong HW;
Nature. 2021-Oct-6; 598(7879):159-166
https://www.nature.com/articles/s41586-021-03970-w
PMID: 34616071   DOI: https://doi.org/10.1038/s41586-021-03970-w

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The mouse cortico-basal ganglia-thalamic network
Foster NN; Barry J; Korobkova L; Garcia L; Gao L; Becerra M; Sherafat Y; Peng B; Li X; Choi JH; Gou L; Zingg B; Azam S; Lo D; Khanjani N; Zhang B; Stanis J; Bowman I; Cotter K; Cao C; Yamashita S; Tugangui A; Li A; Jiang T; Jia X; Feng Z; Aquino S; Mun HS; Zhu M; Santarelli A; Benavidez NL; Song M; Dan G; Fayzullina M; Ustrell S; Boesen T; Johnson DL; Xu H; Bienkowski MS; Yang XW; Gong H; Levine MS; Wickersham I; Luo Q; Hahn JD; Lim BK; Zhang LI; Cepeda C; Hintiryan H; Dong HW;
Nature. 2021-Oct-6; 598(7879):188-194
https://www.nature.com/articles/s41586-021-03993-3
PMID: 34616074   DOI: https://doi.org/10.1038/s41586-021-03993-3

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High-throughput mapping of a whole rhesus monkey brain at micrometer resolution
Xu F; Shen Y; Ding L; Yang CY; Tan H; Wang H; Zhu Q; Xu R; Wu F; Xiao Y; Xu C; Li Q; Su P; Zhang LI; Dong HW; Desimone R; Xu F; Hu X; Lau PM; Bi GQ;
Nat Biotechnol. 2021-Jul-26;
PMID: 34312500   DOI: https://doi.org/10.1038/s41587-021-00986-5

Organization of the inputs and outputs of the mouse superior colliculus
Benavidez NL, Bienkowski MS, Zhu M, Garcia LH, Fayzullina M, Gao L, Bowman I, Gou L, Khanjani N, Cotter KR, Korobkova L, Becerra M, Cao C, Song MY, Zhang B, Yamashita S, Tugangui AJ, Zingg B, Rose K, Lo D, Foster NN, Boesen T, Mun HS, Aquino S, Wickersham IR, Ascoli GA, Hintiryan H, Dong HW
Nature Communications. 2021-Jun-28; 12(1):4004
https://pubmed.ncbi.nlm.nih.gov/34183678/
PMID: 34183678   DOI: https://doi.org/10.1038/s41467-021-24241-2

Connectivity characterization of the mouse basolateral amygdalar complex
Hintiryan H; Bowman I; Johnson DL; Korobkova L; Zhu M; Khanjani N; Gou L; Gao L; Yamashita S; Bienkowski MS; Garcia L; Foster NN; Benavidez NL; Song MY; Lo D; Cotter KR; Becerra M; Aquino S; Cao C; Cabeen RP; Stanis J; Fayzullina M; Ustrell SA; Boesen T; Tugangui AJ; Zhang ZG; Peng B; Fanselow MS; Golshani P; Hahn JD; Wickersham IR; Ascoli GA; Zhang LI; Dong HW;
Nat Commun. 2021-May-17; 12(1):2859
PMID: 34001873   DOI: https://doi.org/10.1038/s41467-021-22915-5

An open access mouse brain flatmap and upgraded rat and human brain flatmaps based on current reference atlases
Hahn JD; Swanson LW; Bowman I; Foster NN; Zingg B; Bienkowski MS; Hintiryan H; Dong HW;
J Comp Neurol. 2021-Feb-1; 529(3):576-594
PMID: 32511750   DOI: https://doi.org/10.1002/cne.24966

Homologous laminar organization of the mouse and human subiculum.
Bienkowski MS; Sepehrband F; Kurniawan ND; Stanis J; Korobkova L; Khanjani N; Clark K; Hintiryan H; Miller CA; Dong HW;
Sci Rep. 2021-Feb-1; 11(1):3729
PMID: 33580088   DOI: https://doi.org/10.1038/s41598-021-81362-w

Extrastriate connectivity of the mouse dorsal lateral geniculate thalamic nucleus
Bienkowski MS; Benavidez NL; Wu K; Gou L; Becerra M; Dong HW;
J Comp Neurol. 2019-May-1; 527(9):1419-1442
PMID: 30620046   DOI: https://doi.org/10.1002/cne.24627

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Precise segmentation of densely interweaving neuron clusters using G-Cut
Li R; Zhu M; Li J; Bienkowski MS; Foster NN; Xu H; Ard T; Bowman I; Zhou C; Veldman MB; Yang XW; Hintiryan H; Zhang J; Dong HW;
Nat Commun. 2019-Apr-1; 10(1):1549
PMID: 30948706   DOI: https://doi.org/10.1038/s41467-019-09515-0

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Integration of gene expression and brain-wide connectivity reveals the multiscale organization of mouse hippocampal networks
Bienkowski MS; Bowman I; Song MY; Gou L; Ard T; Cotter K; Zhu M; Benavidez NL; Yamashita S; Abu-Jaber J; Azam S; Lo D; Foster NN; Hintiryan H; Dong HW;
Nat Neurosci. 2018-Nov-1; 21(11):1628-1643
PMID: 30297807   DOI: https://doi.org/10.1038/s41593-018-0241-y

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The mouse cortico-striatal projectome
Hintiryan H; Foster NN; Bowman I; Bay M; Song MY; Gou L; Yamashita S; Bienkowski MS; Zingg B; Zhu M; Yang XW; Shih JC; Toga AW; Dong HW;
Nat Neurosci. 2016-Aug-1; 19(8):1100-14
PMID: 27322419   DOI: https://doi.org/10.1038/nn.4332

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Neural networks of the mouse neocortex
Zingg B; Hintiryan H; Gou L; Song MY; Bay M; Bienkowski MS; Foster NN; Yamashita S; Bowman I; Toga AW; Dong HW;
Cell. 2014-Feb-1; 156(5):1096-111
PMID: 24581503   DOI: https://doi.org/10.1016/j.cell.2014.02.023

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Comprehensive connectivity of the mouse main olfactory bulb: analysis and online digital atlas
Hintiryan H; Gou L; Zingg B; Yamashita S; Lyden HM; Song MY; Grewal AK; Zhang X; Toga AW; Dong HW;
Front Neuroanat. 2012-Aug-7; 6:30
PMID: 22891053   DOI: https://doi.org/10.3389/fnana.2012.00030


Compensation in the neural circuitry of fear conditioning awakens learning circuits in the bed nuclei of the stria terminalis
Poulos AM; Ponnusamy R; Dong HW; Fanselow MS;
Proc Natl Acad Sci U S A. 2010-Aug-1; 107(33):14881-6
PMID: 20679237   DOI: https://doi.org/10.1073/pnas.1005754107

Genomic-anatomic evidence for distinct functional domains in hippocampal field CA1
Dong HW; Swanson LW; Chen L; Fanselow MS; Toga AW;
Proc Natl Acad Sci U S A. 2009-Jul-1; 106(28):11794-9
PMID: 19561297   DOI: https://doi.org/10.1073/pnas.0812608106


 


BOOKS

The OMICs: Applications in Neuroscience

Edited By Giovanni Coppola
By Toga A, Clark K, Dong HW, Hintiryan H, Thompson PM, Van Horn JD