PUBLICATIONS
A timeline of our latest preprints and journal archives of our research and featured studies.
JOURNALS
Cross-modal coherent registration of whole mouse brains
Qu L; Li Y; Xie P; Liu L; Wang Y; Wu J; Liu Y; Wang T; Li L; Guo K; Wan W; Ouyang L; Xiong F; Kolstad AC; Wu Z; Xu F; Zheng Y; Gong H; Luo Q; Bi G; Dong H; Hawrylycz M; Zeng H; Peng H;
Nat Methods. 2021-Dec-1;
PMID: 34887551 DOI: https://doi.org/10.1038/s41592-021-01334-w
Qu L; Li Y; Xie P; Liu L; Wang Y; Wu J; Liu Y; Wang T; Li L; Guo K; Wan W; Ouyang L; Xiong F; Kolstad AC; Wu Z; Xu F; Zheng Y; Gong H; Luo Q; Bi G; Dong H; Hawrylycz M; Zeng H; Peng H;
Nat Methods. 2021-Dec-1;
PMID: 34887551 DOI: https://doi.org/10.1038/s41592-021-01334-w
Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH
Zhang M; Eichhorn SW; Zingg B; Yao Z; Cotter K; Zeng H; Dong H; Zhuang X;
Nature. 2021-Oct-6; 598(7879):137-143
https://pubmed.ncbi.nlm.nih.gov/34616063/
PMID: 34616063 DOI: https://doi.org/10.1038/s41586-021-03705-x
Zhang M; Eichhorn SW; Zingg B; Yao Z; Cotter K; Zeng H; Dong H; Zhuang X;
Nature. 2021-Oct-6; 598(7879):137-143
https://pubmed.ncbi.nlm.nih.gov/34616063/
PMID: 34616063 DOI: https://doi.org/10.1038/s41586-021-03705-x
A multimodal cell census and atlas of the mammalian primary motor cortex
BRAIN Initiative Cell Census Network (BICCN)
Nature. 2021-Oct-6; 598(7879):86-102
https://pubmed.ncbi.nlm.nih.gov/34616075/
PMID: 34616075 DOI: https://doi.org/10.1038/s41586-021-03950-0
BRAIN Initiative Cell Census Network (BICCN)
Nature. 2021-Oct-6; 598(7879):86-102
https://pubmed.ncbi.nlm.nih.gov/34616075/
PMID: 34616075 DOI: https://doi.org/10.1038/s41586-021-03950-0
Cellular anatomy of the mouse primary motor cortex
Muñoz-Castañeda R; Zingg B; Matho KS; Chen X; Wang Q; Foster NN; Li A; Narasimhan A; Hirokawa KE; Huo B; Bannerjee S; Korobkova L; Park CS; Park YG; Bienkowski MS; Chon U; Wheeler DW; Li X; Wang Y; Naeemi M; Xie P; Liu L; Kelly K; An X; Attili SM; Bowman I; Bludova A; Cetin A; Ding L; Drewes R; D'Orazi F; Elowsky C; Fischer S; Galbavy W; Gao L; Gillis J; Groblewski PA; Gou L; Hahn JD; Hatfield JT; Hintiryan H; Huang JJ; Kondo H; Kuang X; Lesnar P; Li X; Li Y; Lin M; Lo D; Mizrachi J; Mok S; Nicovich PR; Palaniswamy R; Palmer J; Qi X; Shen E; Sun YC; Tao HW; Wakemen W; Wang Y; Yao S; Yuan J; Zhan H; Zhu M; Ng L; Zhang LI; Lim BK; Hawrylycz M; Gong H; Gee JC; Kim Y; Chung K; Yang XW; Peng H; Luo Q; Mitra PP; Zador AM; Zeng H; Ascoli GA; Josh Huang Z; Osten P; Harris JA; Dong HW;
Nature. 2021-Oct-6; 598(7879):159-166
https://www.nature.com/articles/s41586-021-03970-w
PMID: 34616071 DOI: https://doi.org/10.1038/s41586-021-03970-w
Muñoz-Castañeda R; Zingg B; Matho KS; Chen X; Wang Q; Foster NN; Li A; Narasimhan A; Hirokawa KE; Huo B; Bannerjee S; Korobkova L; Park CS; Park YG; Bienkowski MS; Chon U; Wheeler DW; Li X; Wang Y; Naeemi M; Xie P; Liu L; Kelly K; An X; Attili SM; Bowman I; Bludova A; Cetin A; Ding L; Drewes R; D'Orazi F; Elowsky C; Fischer S; Galbavy W; Gao L; Gillis J; Groblewski PA; Gou L; Hahn JD; Hatfield JT; Hintiryan H; Huang JJ; Kondo H; Kuang X; Lesnar P; Li X; Li Y; Lin M; Lo D; Mizrachi J; Mok S; Nicovich PR; Palaniswamy R; Palmer J; Qi X; Shen E; Sun YC; Tao HW; Wakemen W; Wang Y; Yao S; Yuan J; Zhan H; Zhu M; Ng L; Zhang LI; Lim BK; Hawrylycz M; Gong H; Gee JC; Kim Y; Chung K; Yang XW; Peng H; Luo Q; Mitra PP; Zador AM; Zeng H; Ascoli GA; Josh Huang Z; Osten P; Harris JA; Dong HW;
Nature. 2021-Oct-6; 598(7879):159-166
https://www.nature.com/articles/s41586-021-03970-w
PMID: 34616071 DOI: https://doi.org/10.1038/s41586-021-03970-w
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The mouse cortico-basal ganglia-thalamic network
Foster NN; Barry J; Korobkova L; Garcia L; Gao L; Becerra M; Sherafat Y; Peng B; Li X; Choi JH; Gou L; Zingg B; Azam S; Lo D; Khanjani N; Zhang B; Stanis J; Bowman I; Cotter K; Cao C; Yamashita S; Tugangui A; Li A; Jiang T; Jia X; Feng Z; Aquino S; Mun HS; Zhu M; Santarelli A; Benavidez NL; Song M; Dan G; Fayzullina M; Ustrell S; Boesen T; Johnson DL; Xu H; Bienkowski MS; Yang XW; Gong H; Levine MS; Wickersham I; Luo Q; Hahn JD; Lim BK; Zhang LI; Cepeda C; Hintiryan H; Dong HW;
Nature. 2021-Oct-6; 598(7879):188-194
https://www.nature.com/articles/s41586-021-03993-3
PMID: 34616074 DOI: https://doi.org/10.1038/s41586-021-03993-3
Foster NN; Barry J; Korobkova L; Garcia L; Gao L; Becerra M; Sherafat Y; Peng B; Li X; Choi JH; Gou L; Zingg B; Azam S; Lo D; Khanjani N; Zhang B; Stanis J; Bowman I; Cotter K; Cao C; Yamashita S; Tugangui A; Li A; Jiang T; Jia X; Feng Z; Aquino S; Mun HS; Zhu M; Santarelli A; Benavidez NL; Song M; Dan G; Fayzullina M; Ustrell S; Boesen T; Johnson DL; Xu H; Bienkowski MS; Yang XW; Gong H; Levine MS; Wickersham I; Luo Q; Hahn JD; Lim BK; Zhang LI; Cepeda C; Hintiryan H; Dong HW;
Nature. 2021-Oct-6; 598(7879):188-194
https://www.nature.com/articles/s41586-021-03993-3
PMID: 34616074 DOI: https://doi.org/10.1038/s41586-021-03993-3
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High-throughput mapping of a whole rhesus monkey brain at micrometer resolution
Xu F; Shen Y; Ding L; Yang CY; Tan H; Wang H; Zhu Q; Xu R; Wu F; Xiao Y; Xu C; Li Q; Su P; Zhang LI; Dong HW; Desimone R; Xu F; Hu X; Lau PM; Bi GQ;
Nat Biotechnol. 2021-Jul-26;
PMID: 34312500 DOI: https://doi.org/10.1038/s41587-021-00986-5
Xu F; Shen Y; Ding L; Yang CY; Tan H; Wang H; Zhu Q; Xu R; Wu F; Xiao Y; Xu C; Li Q; Su P; Zhang LI; Dong HW; Desimone R; Xu F; Hu X; Lau PM; Bi GQ;
Nat Biotechnol. 2021-Jul-26;
PMID: 34312500 DOI: https://doi.org/10.1038/s41587-021-00986-5
Organization of the inputs and outputs of the mouse superior colliculus
Benavidez NL, Bienkowski MS, Zhu M, Garcia LH, Fayzullina M, Gao L, Bowman I, Gou L, Khanjani N, Cotter KR, Korobkova L, Becerra M, Cao C, Song MY, Zhang B, Yamashita S, Tugangui AJ, Zingg B, Rose K, Lo D, Foster NN, Boesen T, Mun HS, Aquino S, Wickersham IR, Ascoli GA, Hintiryan H, Dong HW
Nature Communications. 2021-Jun-28; 12(1):4004
https://pubmed.ncbi.nlm.nih.gov/34183678/
PMID: 34183678 DOI: https://doi.org/10.1038/s41467-021-24241-2
Benavidez NL, Bienkowski MS, Zhu M, Garcia LH, Fayzullina M, Gao L, Bowman I, Gou L, Khanjani N, Cotter KR, Korobkova L, Becerra M, Cao C, Song MY, Zhang B, Yamashita S, Tugangui AJ, Zingg B, Rose K, Lo D, Foster NN, Boesen T, Mun HS, Aquino S, Wickersham IR, Ascoli GA, Hintiryan H, Dong HW
Nature Communications. 2021-Jun-28; 12(1):4004
https://pubmed.ncbi.nlm.nih.gov/34183678/
PMID: 34183678 DOI: https://doi.org/10.1038/s41467-021-24241-2
Connectivity characterization of the mouse basolateral amygdalar complex
Hintiryan H; Bowman I; Johnson DL; Korobkova L; Zhu M; Khanjani N; Gou L; Gao L; Yamashita S; Bienkowski MS; Garcia L; Foster NN; Benavidez NL; Song MY; Lo D; Cotter KR; Becerra M; Aquino S; Cao C; Cabeen RP; Stanis J; Fayzullina M; Ustrell SA; Boesen T; Tugangui AJ; Zhang ZG; Peng B; Fanselow MS; Golshani P; Hahn JD; Wickersham IR; Ascoli GA; Zhang LI; Dong HW;
Nat Commun. 2021-May-17; 12(1):2859
PMID: 34001873 DOI: https://doi.org/10.1038/s41467-021-22915-5
Hintiryan H; Bowman I; Johnson DL; Korobkova L; Zhu M; Khanjani N; Gou L; Gao L; Yamashita S; Bienkowski MS; Garcia L; Foster NN; Benavidez NL; Song MY; Lo D; Cotter KR; Becerra M; Aquino S; Cao C; Cabeen RP; Stanis J; Fayzullina M; Ustrell SA; Boesen T; Tugangui AJ; Zhang ZG; Peng B; Fanselow MS; Golshani P; Hahn JD; Wickersham IR; Ascoli GA; Zhang LI; Dong HW;
Nat Commun. 2021-May-17; 12(1):2859
PMID: 34001873 DOI: https://doi.org/10.1038/s41467-021-22915-5
An open access mouse brain flatmap and upgraded rat and human brain flatmaps based on current reference atlases
Hahn JD; Swanson LW; Bowman I; Foster NN; Zingg B; Bienkowski MS; Hintiryan H; Dong HW;
J Comp Neurol. 2021-Feb-1; 529(3):576-594
PMID: 32511750 DOI: https://doi.org/10.1002/cne.24966
Hahn JD; Swanson LW; Bowman I; Foster NN; Zingg B; Bienkowski MS; Hintiryan H; Dong HW;
J Comp Neurol. 2021-Feb-1; 529(3):576-594
PMID: 32511750 DOI: https://doi.org/10.1002/cne.24966
Homologous laminar organization of the mouse and human subiculum.
Bienkowski MS; Sepehrband F; Kurniawan ND; Stanis J; Korobkova L; Khanjani N; Clark K; Hintiryan H; Miller CA; Dong HW;
Sci Rep. 2021-Feb-1; 11(1):3729
PMID: 33580088 DOI: https://doi.org/10.1038/s41598-021-81362-w
Bienkowski MS; Sepehrband F; Kurniawan ND; Stanis J; Korobkova L; Khanjani N; Clark K; Hintiryan H; Miller CA; Dong HW;
Sci Rep. 2021-Feb-1; 11(1):3729
PMID: 33580088 DOI: https://doi.org/10.1038/s41598-021-81362-w
Supplementary videos
Extrastriate connectivity of the mouse dorsal lateral geniculate thalamic nucleus
Bienkowski MS; Benavidez NL; Wu K; Gou L; Becerra M; Dong HW;
J Comp Neurol. 2019-May-1; 527(9):1419-1442
PMID: 30620046 DOI: https://doi.org/10.1002/cne.24627
Bienkowski MS; Benavidez NL; Wu K; Gou L; Becerra M; Dong HW;
J Comp Neurol. 2019-May-1; 527(9):1419-1442
PMID: 30620046 DOI: https://doi.org/10.1002/cne.24627
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Precise segmentation of densely interweaving neuron clusters using G-Cut
Li R; Zhu M; Li J; Bienkowski MS; Foster NN; Xu H; Ard T; Bowman I; Zhou C; Veldman MB; Yang XW; Hintiryan H; Zhang J; Dong HW;
Nat Commun. 2019-Apr-1; 10(1):1549
PMID: 30948706 DOI: https://doi.org/10.1038/s41467-019-09515-0
Li R; Zhu M; Li J; Bienkowski MS; Foster NN; Xu H; Ard T; Bowman I; Zhou C; Veldman MB; Yang XW; Hintiryan H; Zhang J; Dong HW;
Nat Commun. 2019-Apr-1; 10(1):1549
PMID: 30948706 DOI: https://doi.org/10.1038/s41467-019-09515-0
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Integration of gene expression and brain-wide connectivity reveals the multiscale organization of mouse hippocampal networks
Bienkowski MS; Bowman I; Song MY; Gou L; Ard T; Cotter K; Zhu M; Benavidez NL; Yamashita S; Abu-Jaber J; Azam S; Lo D; Foster NN; Hintiryan H; Dong HW;
Nat Neurosci. 2018-Nov-1; 21(11):1628-1643
PMID: 30297807 DOI: https://doi.org/10.1038/s41593-018-0241-y
Bienkowski MS; Bowman I; Song MY; Gou L; Ard T; Cotter K; Zhu M; Benavidez NL; Yamashita S; Abu-Jaber J; Azam S; Lo D; Foster NN; Hintiryan H; Dong HW;
Nat Neurosci. 2018-Nov-1; 21(11):1628-1643
PMID: 30297807 DOI: https://doi.org/10.1038/s41593-018-0241-y
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The mouse cortico-striatal projectome
Hintiryan H; Foster NN; Bowman I; Bay M; Song MY; Gou L; Yamashita S; Bienkowski MS; Zingg B; Zhu M; Yang XW; Shih JC; Toga AW; Dong HW;
Nat Neurosci. 2016-Aug-1; 19(8):1100-14
PMID: 27322419 DOI: https://doi.org/10.1038/nn.4332
Hintiryan H; Foster NN; Bowman I; Bay M; Song MY; Gou L; Yamashita S; Bienkowski MS; Zingg B; Zhu M; Yang XW; Shih JC; Toga AW; Dong HW;
Nat Neurosci. 2016-Aug-1; 19(8):1100-14
PMID: 27322419 DOI: https://doi.org/10.1038/nn.4332
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Neural networks of the mouse neocortex
Zingg B; Hintiryan H; Gou L; Song MY; Bay M; Bienkowski MS; Foster NN; Yamashita S; Bowman I; Toga AW; Dong HW;
Cell. 2014-Feb-1; 156(5):1096-111
PMID: 24581503 DOI: https://doi.org/10.1016/j.cell.2014.02.023
Zingg B; Hintiryan H; Gou L; Song MY; Bay M; Bienkowski MS; Foster NN; Yamashita S; Bowman I; Toga AW; Dong HW;
Cell. 2014-Feb-1; 156(5):1096-111
PMID: 24581503 DOI: https://doi.org/10.1016/j.cell.2014.02.023
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Comprehensive connectivity of the mouse main olfactory bulb: analysis and online digital atlas
Hintiryan H; Gou L; Zingg B; Yamashita S; Lyden HM; Song MY; Grewal AK; Zhang X; Toga AW; Dong HW;
Front Neuroanat. 2012-Aug-7; 6:30
PMID: 22891053 DOI: https://doi.org/10.3389/fnana.2012.00030
Hintiryan H; Gou L; Zingg B; Yamashita S; Lyden HM; Song MY; Grewal AK; Zhang X; Toga AW; Dong HW;
Front Neuroanat. 2012-Aug-7; 6:30
PMID: 22891053 DOI: https://doi.org/10.3389/fnana.2012.00030
Cyto- and chemoarchitecture of the hypothalamic paraventricular nucleus in the C57BL/6J male mouse: a study of immunostaining and multiple fluorescent tract tracing
Biag J; Huang Y; Gou L; Hintiryan H; Askarinam A; Hahn JD; Toga AW; Dong HW;
J Comp Neurol. 2012-Jan-1; 520(1):6-33
PMID: 21674499 DOI: https://doi.org/10.1002/cne.22698
Biag J; Huang Y; Gou L; Hintiryan H; Askarinam A; Hahn JD; Toga AW; Dong HW;
J Comp Neurol. 2012-Jan-1; 520(1):6-33
PMID: 21674499 DOI: https://doi.org/10.1002/cne.22698
Compensation in the neural circuitry of fear conditioning awakens learning circuits in the bed nuclei of the stria terminalis
Poulos AM; Ponnusamy R; Dong HW; Fanselow MS;
Proc Natl Acad Sci U S A. 2010-Aug-1; 107(33):14881-6
PMID: 20679237 DOI: https://doi.org/10.1073/pnas.1005754107
Poulos AM; Ponnusamy R; Dong HW; Fanselow MS;
Proc Natl Acad Sci U S A. 2010-Aug-1; 107(33):14881-6
PMID: 20679237 DOI: https://doi.org/10.1073/pnas.1005754107
Genomic-anatomic evidence for distinct functional domains in hippocampal field CA1
Dong HW; Swanson LW; Chen L; Fanselow MS; Toga AW;
Proc Natl Acad Sci U S A. 2009-Jul-1; 106(28):11794-9
PMID: 19561297 DOI: https://doi.org/10.1073/pnas.0812608106
Dong HW; Swanson LW; Chen L; Fanselow MS; Toga AW;
Proc Natl Acad Sci U S A. 2009-Jul-1; 106(28):11794-9
PMID: 19561297 DOI: https://doi.org/10.1073/pnas.0812608106
Combining collation and annotation efforts toward completion of the rat and mouse connectomes in BAMS
Bota M; Dong HW; Swanson LW;
Front Neuroinform. 0-Dec; 6:2
PMID: 22403539 DOI: https://doi.org/10.3389/fninf.2012.00002
Bota M; Dong HW; Swanson LW;
Front Neuroinform. 0-Dec; 6:2
PMID: 22403539 DOI: https://doi.org/10.3389/fninf.2012.00002
BOOKS
The OMICs: Applications in Neuroscience
Edited By Giovanni CoppolaBy Toga A, Clark K, Dong HW, Hintiryan H, Thompson PM, Van Horn JD
The Allen Reference Atlas, (Book + CD-ROM): A Digital Color Brain Atlas of the C57BL/6J Male Mouse
By by Hong Wei Dong, The Allen Institute for Brain Science
